rs50789891 SNP Detail

Summary

• ID
  rs50789891
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CTGGAAGCTG TGTACCACAA
  A
  AACCACCCTA TCCATACAGT CTGCG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144675695	ENSMUSSNP4240187	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322633682	CHEV_8_41999010	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50789891					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366693 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1078 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	1019 bp downstream
Tssr77039	transcription start site region 77039	302 bp upstream
Tssr77040	transcription start site region 77040	347 bp upstream
Tssr77041	transcription start site region 77041	1255 bp upstream
Tssr77042	transcription start site region 77042	1397 bp upstream
Tssr77043	transcription start site region 77043	1992 bp upstream