rs50790107 SNP Detail

Summary

• ID
  rs50790107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113174756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA TTCTTTGGAA GGCCGTTTGA
  Y
  TCACGGAACA GAGTCAGAGG TCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145257124	ENSMUSSNP622874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50790107					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113174756 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Gm10735	predicted gene 10735	1079 bp downstream
Mir449a	microRNA 449a	598 bp downstream
Mir449b	microRNA 449b	724 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	598 bp distal
Rr486473	regulatory region 486473	25 bp proximal
Tssr121166	transcription start site region 121166	608 bp downstream