rs50790320 SNP Detail

Summary

• ID
  rs50790320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156057234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT GGGAAGGCAA GGCTGAGCCT
  Y
  TGTCTGCCTG GCAGCACCTG GCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60330232	NES15828210	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	T	C	T	T
ss145791101	ENSMUSSNP3488898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50790320					SNP	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330232	NES15828210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156057234 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	310 bp distal
Rr421147	regulatory region 421147	within coordinates
Rr421148	regulatory region 421148	24 bp distal
Rr421149	regulatory region 421149	75 bp proximal
Rr421150	regulatory region 421150	973 bp proximal