rs50790481 SNP Detail

Summary

• ID
  rs50790481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115634533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAGAAAG AGTAGTCAAC AGAGTAGAGA AAAAAGGATG
  CAGGAAACCG ATCATAAAAC CATCAATGTG CAGAACCTCA GGGAATGGGG AAGAAAAACT
  R
  AAACAATATA GGAGAAACTG AAAGAAAAAG AAATTGGCAT AACAAATCCC TAACTTTGTG
  GGTAGCCTTG TCCTGAAGGC CATATGACTG ACAGAGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145720557	ENSMUSSNP2370276	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322438440	CHEV_7_123178812	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50790481					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115634533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19604	CpG island 19604	506 bp distal
Rr654130	regulatory region 654130	1316 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Tssr74379	transcription start site region 74379	1674 bp upstream
Tssr74380	transcription start site region 74380	1476 bp upstream
Tssr74381	transcription start site region 74381	1403 bp upstream
Tssr74382	transcription start site region 74382	960 bp upstream
Tssr74383	transcription start site region 74383	881 bp upstream
Tssr74384	transcription start site region 74384	755 bp upstream
Tssr74385	transcription start site region 74385	679 bp upstream