rs50790689 SNP Detail

Summary

• ID
  rs50790689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:132291041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTTATA GCCCCAAGTA
  TTTCATTCAT TGAAATAATA AAATATATTG CTTTCAGTAA AATATAAAAT ACAATGAATA
  TTGAGCAGCT ATCATGAAAA AAAGAAAGAG AACATAGGTC TAGCAACATA TTTCAGTGGC
  AAAAGCACTT ACATAATGAC TTGTATTAAG TTCCTGAATC TATATGTTAG AAGGATAAAT
  R
  CTGCTACCAA TAAGATGGCA TCTGTCAGAA TGTGCTGAAG CATTTGAAAA TATGGAGACA
  CATGGGTAGA CACACTCAGA GACTTGCATA TTTTTATGAC CATGCATAAG ATAATTAAAT
  ATTAAAGTAA TATTTAGAAG AAATTAATCC CTGATATTGA TAGTTCATGT TGTACAGTTT
  AAAATTTGTT AACATCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133730229	ENSMUSSNP6719328	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50790689					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:132291041 () rs orientation: forward

Symbol	Name	Function Class
Prb1b	proline-rich protein BstNI subfamily 1B	within coordinates
Tssr2031	transcription start site region 2031	673 bp downstream