rs50792000 SNP Detail

Summary

• ID
  rs50792000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24847139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATTATG ATTAAAAATA
  AATCTCAAAA ATACTATCCT GGAGCACATC TTATTGCATG AAATAATGGA AGACACTCCC
  TTGTCTAATG CATTTTTGAA ATATGACAGA AAGACAATCT GCTGATTTAA TGCATTCTTC
  CCATCTAATT TAGCCAACTT GTCACTTGAT ATATACAAAC TCGTCACTGT TGTGACAGGC
  S
  GAGATTATCT GAACGAGATC TAAAACAAAC CACAAGTGTA AAGAGATGGC AGTAATTGGT
  TGTGTCTGCA TTACAGGGAA TGTCAGTAAT GCTATGTGGC CATGTGACCT CTAATTTTAA
  GTTTACAGAT TCACATGACA TACTTAGGGA CATAGACTTG TGTGCTATCC ATAGTGCAAG
  GACTAGAAAG TTGTCTGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61262267	NES16878922	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50792000					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262267	NES16878922	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24847139 () rs orientation: forward

Symbol	Name	Function Class
Gm68022	predicted gene, 68022	within coordinates