rs50792451 SNP Detail

Summary

• ID
  rs50792451
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84085583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCTGGGCG GCAGCTTCTC GGGGCTCGAG CCCATGGGGC
  TGCTCTGGGC CATGGAGCCC GATCGGCCTT TCTGGCGCCT GATCAAGCGC GACGTGCAGA
  M
  GCCCTTCTTG GTGGAGCTGG AGGTGCTGGA CGGACACGAG CCCGATGGCG GGCGGCGGCT
  GGCGCGGACG GTGCACGAGC GTCACTTCAT GGCTCCCGGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61662830	NES17612841	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C	C	A	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50792451					SNP	A	A	C	C	C	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61662830	NES17612841	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84085583 () rs orientation: forward

Symbol	Name	Function Class
4732463B04Rik	RIKEN cDNA 4732463B04 gene	within coordinates
Acot4	acyl-CoA thioesterase 4	within coordinates
Cpgi4854	CpG island 4854	within coordinates
Gm40474	predicted gene, 40474	within coordinates
Gm49366	predicted gene, 49366	within coordinates
Rr265659	regulatory region 265659	within coordinates
Tssr114309	transcription start site region 114309	430 bp downstream
Tssr114310	transcription start site region 114310	374 bp downstream