rs50793434 SNP Detail

Summary

• ID
  rs50793434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGTTGGA AATGGTGTAT TAACACTATT CTAAAGCTTG
  AAGTCTCTGG AGTTATTTAA CCTTGCTGCA GAATGATAGT AAGTTCCTGC CTGCCACTCT
  R
  CTTTTTACTC TGAAAAGGCT GTTGGGGGTG ACTGTTTTTG CCATCAGAGA CAGAAACTGG
  CAGGAACAGT CTCTCATTAC CTCACATTCT ACTAAAATTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52680821	NES15522601	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50793434					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680821	NES15522601	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	921 bp proximal
Dhfr	dihydrofolate reductase	1331 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	1048 bp upstream
Rr483661	regulatory region 483661	784 bp proximal
Rr483662	regulatory region 483662	1065 bp proximal
Rr483663	regulatory region 483663	1215 bp proximal
Rr483664	regulatory region 483664	1523 bp proximal
Tssr120622	transcription start site region 120622	1296 bp upstream
Tssr120623	transcription start site region 120623	1687 bp upstream
Tssr120624	transcription start site region 120624	1734 bp upstream
Tssr120625	transcription start site region 120625	1760 bp upstream
Tssr120626	transcription start site region 120626	1787 bp upstream
Tssr123429	transcription start site region 123429	1051 bp downstream
Tssr123430	transcription start site region 123430	1491 bp downstream