rs50793796 SNP Detail

Summary

• ID
  rs50793796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64085028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACATTT TGTTTGCGTT
  TTCCATTGTT TGGATGTGCC TCACCTGTGA TTATTAAATG AAGATGTAAA GGTTTATTCT
  GTATCTGGAG AGTTGAAACA TTTAAATTAA AATTTGTACT GCTTTGTGTT CAGTTAGAGA
  ATGAGACTTT GGACTTCTCT CTTCCTTCCC CCCAGCCTGC CCATGCACAA GATGATGAAC
  R
  CCGACCTTAG CAGAATCTTG AAAAGCCCAG AAATCCAAAG AGCCCTCCGA GCACCACGGT
  AGAGTTTTAA AACTTAAGGT CTAACACTTG ATACGACCCC TTGACTATTA AAGGGATACA
  TGTTGATTAA TGAATGCTAC CTCTTGATAG CAAGAAGATT CATCGCAGAG TCTTGAAGAA
  GAATCCACTG AAGAACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410341	NES16794826	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50793796					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410341	NES16794826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64085028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	1430 bp proximal
Gm22455	predicted gene, 22455	553 bp downstream
Gm22571	predicted gene, 22571	1804 bp downstream
Gm23136	predicted gene, 23136	987 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368801	regulatory region 368801	1507 bp upstream
Snapc5	small nuclear RNA activating complex, polypeptide 5	1528 bp upstream
Tssr85600	transcription start site region 85600	728 bp downstream
Tssr85601	transcription start site region 85601	348 bp downstream
Tssr85602	transcription start site region 85602	294 bp downstream
Tssr85603	transcription start site region 85603	8 bp downstream
Tssr85604	transcription start site region 85604	6 bp upstream
Tssr85605	transcription start site region 85605	529 bp upstream
Tssr85606	transcription start site region 85606	654 bp upstream
Tssr85607	transcription start site region 85607	1525 bp upstream
Tssr85608	transcription start site region 85608	1543 bp upstream
Tssr90132	transcription start site region 90132	42 bp downstream
Tssr90133	transcription start site region 90133	597 bp downstream
Tssr90134	transcription start site region 90134	649 bp downstream