rs50794812 SNP Detail

Summary

• ID
  rs50794812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75700999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCAGGG TAGGAAAACT
  GGTGTTTCCA TATGGGGAAG AGTTAGGTCT AAGAGGTAGA GGAGCTTGCC CTCAGACCAA
  GGGCATGGTC AGCCATGGTT AGACTTGTTT CCTGCCGGGA CTGAAGGCCA GCACTCACAA
  TTCCCTTCAC CCATCCCCCA TTGGACTGTG CTCAGGGGCA AGAAGGTAAC ATGGCAACCC
  R
  GAGCTTCTGC CCTAAATGAA GCAGAAGGCT GAAGGAGAGG TCTCCAAGTC ACACTCCATA
  TTACAGTGCA CCCGGCCAGG GAGAGCCATG ATCAGTTTTT CTCTGACTGA CATACCTTCT
  TTTCCTGTTC CTTTTCAGGC AAGCGCTACC CTCAATGAAG TTACAGGTTA AAAAAACTTC
  CATGCCATCT GCCTCATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62907389	NES17398009	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50794812					SNP	A	G	G	G	A	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62907389	NES17398009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75700999 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	1492 bp downstream
Rr392951	regulatory region 392951	within coordinates
Rr531033	regulatory region 531033	1545 bp distal