rs50794894 SNP Detail

Summary

• ID
  rs50794894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70953332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAACGCA GATAGGGTCA TAGGAGCCAC TGCAGCCTAG
  ATTACACCAC TGGGTGTTCT GTCACTAGGC CATTCTCACC AAGCAGTCCT CAGAACTGGG
  M
  GCACTGTTGC CAGCATTTAA TGCCAGCATT TAATGCCAGC ATTTAATGCC AGCATTAGGG
  GAGGCAGAGG CAGAAGGATC TCTCTGAGTT CAAGGCCAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145126680	ENSMUSSNP1321970	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322700338	CHEV_8_73024581	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50794894					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70953332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			175 bp proximal
Cpgi20465	CpG island 20465			1609 bp proximal
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			within coordinates
Rr664779	regulatory region 664779			1264 bp proximal
Rr664780	regulatory region 664780			1393 bp proximal
Tssr77747	transcription start site region 77747			434 bp upstream