rs50795079 SNP Detail

Summary

• ID
  rs50795079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75297047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAGACT CTGACCCTGG
  CAGACTGTTA TGAGGCACCC CCAAAATTCA GAAACACCAA AAGGAGGCTG CAGAGAGCAT
  CATTTTAGTG GGCACCACCC AGTGAATTCA CAGTACGAGG ACCACACAAG GCCTTTAACG
  GAACCCATCC TGAGCTTTTA TAGTATTGGA AAAACAGTTA CTTTTAGGTC ATTTGGAAAA
  Y
  AAATTAAATT GTCACATGTA CAAGGAATCA AAATGTCTAC TCATTGAGAT ACCTAGATCC
  AGGAAACAAA GGGCTTGTTT ATTACAAAGC CCTGGGTTTT ATCCTCATGA TGAAAAAGAC
  TAGGTATATA ATTTAAACAA TTTTTAAAAA CTTTGAATGA CTTTATAACA TCAGTAGTTT
  AAAATCAGAT TTCAAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136640769	ENSMUSSNP6146058	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50795079					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75297047 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90536	transcription start site region 90536	1867 bp upstream
Tssr90537	transcription start site region 90537	1792 bp upstream
Tssr90538	transcription start site region 90538	1764 bp upstream