rs50795950 SNP Detail

Summary

• ID
  rs50795950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53376146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCTAT TACAGATTCC
  TTCCCTCCGA GACTATCCTT TAACATGGGA ATTTAGAAGG GGCAGTGGCT TTCCTAGATG
  CACTGCACTT ATTTTTAACA GTGTGTTGGG AGGCTGAACT GCCCTGTGCT AAGAGCGCTG
  GGCTGATAGA AGGAAAATAG GGACTGACAC AAACAGTTGA ACTCAGTGGC AACCTTTTCC
  R
  CTACCCTTGC TGCTAAGCAT AACACAATGA CTAAGTTATA AAGAAAAACA CCACAGCAGT
  TTTCAGTCTC ACACGTACAG GTGTCAGGGA TTTTTTTTTT TTTTTTAAGT TAAAAGTTTA
  CAGATGCAAA TGGAGTTCAC AGCTCACACC CTTTCTTCAG CCTCTGCAGT GAAAATTTGC
  TATTTTGCTT TTGAACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137751762	ENSMUSSNP3332960	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss324042712	CHEV_12_54430350	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50795950					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53376146 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	1856 bp proximal