rs50796519 SNP Detail

Summary

• ID
  rs50796519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACACTT GCATAGATCC
  TGAAAGAGTT GGGACCCAAA GGACCAGGTT TAGCAGACCG GCGCAATGGC TGTGGCACAA
  GTCATGCGTG CTGCGGGATG GCTGGCCTAC TTTGCGTTGC TGCTTCCCTG GAATAAAGCT
  GGAACTACCA GGAGTAGGGA AAATCGCCAT CCAAGTACCT CTTTAGTGAT GTCCCACTGA
  S
  ATGGAAATTT CATTTGTTTG TTTTTAATAG CAGCAAGAGC TGGAATGTAG CTCAGTATAT
  CACATATTTG CTTGCTATGA ATGAAGCCTT GGGTGCGATC CCCAGCTATG GATAAACTAG
  GCGTGGCTGT GCATGTCTGC CGTCCCAGTA CTTGGGAGGC AGAGATGGAA AAATCAGAAG
  TTCAAGGTCA TCTTTGGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61079240	NES16586987	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	C	G	G	G	G		G	G		G
ss135865110	ENSMUSSNP1081011	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320954692	CHEV_3_127202660	CHEVERUD	SCREENING_POP	f	SNP												G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs50796519					SNP	C	C	C	G	C	G	C	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079240	NES16586987	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293391 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	mRNA-UTR
Cpgi13791	CpG island 13791	333 bp distal
Rr584800	regulatory region 584800	251 bp distal
Tssr35576	transcription start site region 35576	704 bp upstream
Tssr35577	transcription start site region 35577	671 bp upstream
Tssr35578	transcription start site region 35578	649 bp upstream
Tssr35579	transcription start site region 35579	605 bp upstream