rs50797019 SNP Detail

Summary

• ID
  rs50797019
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73359404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTGTGA GCAGAGGGCA
  GGAAAAGGAG AAGGAAATGA GGCTCTGCCA CTTCTCAGCG TGCTCAGCCT GAGGCTGGCA
  CAGACTCCTC CCAGCAGCCA GAGCCTAGAT GGGGAAACTG AGGATGCAGG AAGTGGAGGG
  TGTTGATGGA ACTCTGGCCT CTACCTCCAT AGGCCACGCC TTCACGATGG TCTCTCCTCT
  S
  TACTCTGTGC GTGTCTCCTG ACTTTTGTCC TCTTTGATGA ACCAGGTGTG GGTCAGAACC
  ATGGCTCAGC TATGTGTATA TGGCACTGTG GTAACTTTTG CCCCTGTAGG AGGCTGCAGG
  CTGCCTGAGG CCAAAAGCCC CTTCAAGGCC TAGTGGCCAC ACCAGTTCTT CAGTGATGAG
  GTTTTGAAAT CACTTGTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148110678	ENSMUSSNP1419040	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50797019					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73359404 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	1057 bp distal
Tssr4621	transcription start site region 4621	267 bp upstream
Tssr4622	transcription start site region 4622	329 bp upstream
Tssr131529	transcription start site region 131529	279 bp upstream
Tssr134702	transcription start site region 134702	277 bp upstream
Tssr134703	transcription start site region 134703	237 bp upstream
Tssr134704	transcription start site region 134704	222 bp upstream
Tssr134705	transcription start site region 134705	213 bp upstream