rs50797865 SNP Detail

Summary

• ID
  rs50797865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4216200 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTCCACGATC CTGCTGAGAA
  CACACCCGGA CTGAGAATGA AGGGGACGCG CTCGTGGCAA ACTCCTTAAA AGAAAAAAAA
  AAAAAAAAAG CCACCTCGTA GCCTCCTCCC CCCTCCTTGT TTTTCCCTCC CTTCATCACA
  TGAGCACAGC CCAGACACGC CTTGCAGCAT CTCCCCCTAG GCTGCTAGGA CCAGAGGCTC
  S
  GACACCAGGC CCCCAGCAGC CCACCCCGCC CCCAGGGCTT CTCGGGTCAT TAAAGGGGGA
  CGAGGGGTTT GGGGTCTGTC CCAGGGCTGC AGAAGGTTCA GGAGCAGCAA AGAAGGGGGC
  GGGGGCAAAA GCTTTGTTTT TTTAATGTAA TGATTGATAA CCCAAGGTTG GATCTTCTGC
  AGACTAAGGA TTTACATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146743543	ENSMUSSNP5145531	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323240834	CHEV_10_6080341	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50797865					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4216200 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	180 bp upstream
Cpgi1267	CpG island 1267	102 bp proximal
Cpgi1268	CpG island 1268	371 bp distal
Gm67397	predicted gene, 67397	within coordinates
Gm67407	predicted gene, 67407	127 bp downstream
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	within coordinates
Rr426945	regulatory region 426945	596 bp proximal
Tssr3113	transcription start site region 3113	65 bp downstream
Tssr3114	transcription start site region 3114	330 bp upstream
Tssr92240	transcription start site region 92240	123 bp upstream
Tssr92241	transcription start site region 92241	153 bp upstream