rs50798248 SNP Detail

Summary

• ID
  rs50798248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91861297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA AAAAAGACAA CCCTGATTTA
  Y
  AACCAGCCAT TAAACACATT AGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145564057	ENSMUSSNP4585532	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		C
ss322789584	CHEV_8_93658568	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50798248					SNP	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91861297 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	189 bp distal
Gm63829	predicted gene, 63829	837 bp downstream
Rr368579	regulatory region 368579	286 bp downstream
Rr667489	regulatory region 667489	683 bp distal
Rr667490	regulatory region 667490	within coordinates
Rr667491	regulatory region 667491	603 bp proximal
Rr667492	regulatory region 667492	1013 bp proximal
Tssr82405	transcription start site region 82405	647 bp upstream
Tssr82406	transcription start site region 82406	631 bp upstream
Tssr82407	transcription start site region 82407	990 bp downstream
Tssr82408	transcription start site region 82408	1018 bp downstream
Tssr82409	transcription start site region 82409	1033 bp downstream