rs50799865 SNP Detail

Summary

• ID
  rs50799865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108779449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TCTTTAAACT TCTGTAGGCA
  S
  TAAGTATGCA TGTGGTGCAC ATAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321637450	CHEV_5_109060602	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50799865					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108779449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	1274 bp distal
Gak	cyclin G associated kinase	1828 bp upstream
Rr616724	regulatory region 616724	1564 bp distal
Rr616725	regulatory region 616725	971 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	1707 bp downstream
Tssr47845	transcription start site region 47845	1565 bp downstream
Tssr47846	transcription start site region 47846	1533 bp downstream
Tssr52443	transcription start site region 52443	1905 bp upstream
Tssr52444	transcription start site region 52444	1876 bp upstream
Tssr52445	transcription start site region 52445	1822 bp upstream