rs50801974 SNP Detail

Summary

• ID
  rs50801974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9620948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAATTTT TAGTATTCTT
  TAATCCCCTC CCCCCAAAAT GTATATTTAC CAGTATTTGA TCTGTACAAC AGATGACATC
  TGGAAGATTT TTTTTGTTCC AAATCTTCTG TATCCCAGGC ATCCAGAACA GTGCTTGACA
  CATTGAAGGG ATATTGCTAT CCATTGACTT CTTGCATAAT TAATATTGAT CCTAAAATAC
  Y
  TTGTAAGTTA CCAAATGAAA GGTGATTCAA AAGACCCAAT AATGCTAGGA ATATTTTTAC
  AAAACTGTGT TTTGTTTTAT TTTGTTTTGT TTTGTTTTGA AATTATGATT TGAAATGTTG
  ATTATAAGGT GTGTTTAGAA ATTTTGTTTA GTTATTTGGT TTTCCTGGAG TCAAATGCAG
  GATTGCATCT ATGCTGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146597865	ENSMUSSNP5946843	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50801974					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9620948 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	1479 bp upstream
Cpgi9693	CpG island 9693	1364 bp distal
Gm58470	predicted gene, 58470	1453 bp downstream
Tssr152399	transcription start site region 152399	1514 bp upstream
Tssr152400	transcription start site region 152400	1496 bp upstream
Tssr152401	transcription start site region 152401	1466 bp upstream