rs50802377 SNP Detail

Summary

• ID
  rs50802377
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30905719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTCTAG GGCAGCAGCT
  TTATCCTTAG CTCTACAGTA ACAATCATCA CCCAGGGGCA GACACACCAT GAACACAGAA
  TCATAGTCAG TTATACAGCA ATCGCACCTT TAAAGAGAGT AAAGGAACAC GGGCAGCACT
  GGGTATGGCA GCATGTTAGC AATTGTGGGC ATAAGTGGAG AGGGCACAGT GAGTCTAGTG
  S
  TTAGCGTCAG CATGGTAGAT AGAAGGAAGA GGAGGAGAAA ATCATATGGA CATAAACATC
  CAGAACAAAG ATAGGCTGTC TGACAGCCTG TCTCTCGGGA GGCTGAGGCA CAGGGATGCT
  GCAATAGAGG CCAAACTGTG TTCTTTGTGA GAAAAAGAAA GCAGAAGACA AGATTAAGGA
  GAAAAAGAGA AGAAAAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989000	NES16133990	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50802377					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989000	NES16133990	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30905719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1901 bp proximal
Rr645057	regulatory region 645057	1679 bp proximal
Tssr65855	transcription start site region 65855	1538 bp upstream