rs50805489 SNP Detail

Summary

• ID
  rs50805489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55795568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT AGCCTCGGGA ACTGTGTTAC
  S
  CAGTGTGTGT TGAGAAAAGA TCAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60465931	NES16446001	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		C	G	C		G
ss325189952	CHEV_16_55975318	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50805489					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60465931	NES16446001	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55795568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	375 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	1344 bp downstream
Rr517155	regulatory region 517155	1483 bp distal
Rr517157	regulatory region 517157	1312 bp distal
Rr517158	regulatory region 517158	1246 bp distal
Rr517159	regulatory region 517159	98 bp distal
Tssr138799	transcription start site region 138799	1405 bp downstream
Tssr138800	transcription start site region 138800	1375 bp downstream
Tssr138801	transcription start site region 138801	1341 bp downstream
Tssr138802	transcription start site region 138802	1313 bp downstream
Tssr138803	transcription start site region 138803	within coordinates
Tssr141546	transcription start site region 141546	680 bp upstream
Tssr141547	transcription start site region 141547	598 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	588 bp upstream