rs50806074 SNP Detail

Summary

• ID
  rs50806074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31468919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAG
  AAAATCACCA CCCCAAAGGC CACAAGGTAA GGGCTAGTTA GGGAAGGGGA AACGAATCTT
  CCAAGACTGG GGTGAAGGAA GAAATATGAT CAAAATGCAT TGCACAAACT CTCAAAGGAC
  TAATAAAAAA ATGAAGAGGG AGATTAATAT GTAAAAGCGT AAGTTGAGCA AAATAGTCTT
  Y
  TATCTTTTAG AAATCTCCAT GATTTCCTCA AGAAAATATA GACAAGTGTG GGCACTAATG
  GAGACCCCAG TAAGGAAGTA AAATGAATGC TGTTATTTAA TCAGCTATGG TTGTTGCTTG
  TCCTGTGTTA TTACTATGGC CTGAGATAAC TTATGTTGCA ATAACACATT TTTGGCCTAA
  AGAAAATATT TCAAAGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445926	ENSMUSSNP210718	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50806074					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31468919 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	852 bp upstream
Tssr133931	transcription start site region 133931	821 bp upstream
Tssr133932	transcription start site region 133932	793 bp upstream