rs50807051 SNP Detail

Summary

• ID
  rs50807051
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91342798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTCTTTGGGG GGTTGTATGC TTGAGGCATG GGGTACAGAT
  CCAGGGAATA TGCCCTTAGC ACTGTGCTGA GGGAGGGAGA TTCTAGACAG GGGTGTGGTA
  G
  GGAGTGGGGT GAGGCAGTAG TAGCACTTCC AAAGGCTTAC CATTTGGGGT CAAGACCACA
  GGCTGAAAAG CTTAGTGATC ACAGGTCCTT CGTGGCTTTA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148555511	ENSMUSSNP5941657	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50807051					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91342798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	510 bp proximal
Gm61328	predicted gene, 61328	within coordinates
Ifngr2	interferon gamma receptor 2	1149 bp upstream
Rr325567	regulatory region 325567	within coordinates
Rr370129	regulatory region 370129	116 bp downstream
Rr370130	regulatory region 370130	141 bp upstream
Tssr139405	transcription start site region 139405	216 bp downstream
Tssr139406	transcription start site region 139406	188 bp downstream
Tssr139407	transcription start site region 139407	1138 bp upstream
Tssr139408	transcription start site region 139408	1322 bp upstream
Tssr139409	transcription start site region 139409	1919 bp upstream
Tssr142093	transcription start site region 142093	1703 bp downstream