rs50808072 SNP Detail

Summary

• ID
  rs50808072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19193599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGGATT GCTGTGAGTT
  CAAGACCATA CACAACAAGA CCCTGTCTCA GAAAACAAAA GCCAAAATTG AAGCCAGTCC
  CTGGGTTCAA GGACATCCTG AACTTCAGCC CCTGGTGGGG TAAGGGTAGA TAACCCGCAG
  CCCCGGCTGG TCTCACTTTC TCAGTCTGTA CAATGAAGGA GAGAGAGCCT CAGTTGCCTC
  Y
  CTGGCTAGCT GGAAGCCCAG ACAGGTGTTG ACTTGCAGGG GCAAACAGAC TGGAGGGGGA
  GGGGAGAGGG CTGTGCTGAG AACACACAGT GCCTTGTGTG TGTGTGTGTG TGTAGGGAGT
  GCATCACCCT GGTCCAGAGC CCATTGTCTT GCTGTCTTAG AAATTCTCCC TGAGCCTCAG
  TTTCCCTTTG TGAAAATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148476747	ENSMUSSNP945613	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50808072					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19193599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	601 bp distal
Gm23099	predicted gene, 23099	1123 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	853 bp upstream
Rr400149	regulatory region 400149	617 bp downstream
Rr643146	regulatory region 643146	864 bp distal
Rr643147	regulatory region 643147	363 bp distal
Rr643148	regulatory region 643148	1858 bp proximal
Rr643149	regulatory region 643149	1990 bp proximal
Tssr64858	transcription start site region 64858	739 bp downstream
Tssr70918	transcription start site region 70918	989 bp upstream
Tssr70919	transcription start site region 70919	935 bp upstream
Tssr70920	transcription start site region 70920	898 bp upstream
Tssr70921	transcription start site region 70921	874 bp upstream
Tssr70922	transcription start site region 70922	818 bp upstream
Tssr70923	transcription start site region 70923	421 bp upstream