rs50808130 SNP Detail

Summary

• ID
  rs50808130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44777262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTTACA GACACTTGCC
  ACCAAGTCTG AGGATCTAAA TTCAATCCCT AGGCCTGACA CAGTGAACAA AAGCAACTGA
  CTTCCTCAAG TCATCCTGTG ACTCCACGCA AGCACTGTGA CACACATACA CACACACATA
  CACACACACA CACACACACA CACACACACA CACGAGAGCA ATAAACAAAC AAAATAGATG
  R
  AGAATGGAAA ACTTAGCATT AAAAAATAAA TTGAGTGATT GAACTTTACT GGATGCTCCT
  CTAGGCAAGC ATGAGTTCAT TTTTTCATTG TTTTCCAGGC AGGGGGAAGT AGGTTGTCGC
  ACTATGAAGT GCCACACTAT GCATCCCAAT CCTGCCCCTG CCTCCAGAGC GCTGGGACGG
  TTGCAGATGC TCAACCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61783507	NES17517276	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	A		A
ss324330190	CHEV_13_44719155	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50808130					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61783507	NES17517276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44777262 () rs orientation: forward

Symbol	Name	Function Class
Gm40931	predicted gene, 40931	within coordinates
Gm47805	predicted gene, 47805	within coordinates
Rr283673	regulatory region 283673	within coordinates