rs50808361 SNP Detail

Summary

• ID
  rs50808361
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130486548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTATTATA ACGAAAAGTG
  TAAGTACATT TAAAAAAATA GTATTTGGCA AGAGTTTTAA TACACTGACC TTTGGGGCTG
  GAGAGATGAC TCAGCAGTTA AGAGCACTGA CTGCTCTTCC AGAGGACCCA CGTTCAATTC
  CCACAAACTT TAGGTTAGGT CCTGTGGAGC ACTAGAGAGC AGGCTTGGCT CCAGCAGTAC
  S
  GAATCTCAGC CTGTGGGTTC TCTGGGCTGA AGCGCTACCT GGGCAGGAGC TAGCTTCATA
  GAACTCATTA TCTGGCACTC ACTCTTTGGA CTCTGTAAAT GTGTCGTTCT TATTTCTACG
  TGCAGACCGA CCTGCGCTAG GAAGGTTACA GCATACAACA GAAACAACGG CCGTGCACTC
  ACAGCAGCTC CATTCCCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080659	NES16590449	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50808361					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080659	NES16590449	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130486548 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	184 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398015	regulatory region 398015	1881 bp downstream
Rr398016	regulatory region 398016	1139 bp upstream
Rr585189	regulatory region 585189	1975 bp distal
Rr585190	regulatory region 585190	1386 bp distal
Rr585191	regulatory region 585191	752 bp distal
Rr585192	regulatory region 585192	1342 bp distal
Rr585193	regulatory region 585193	1109 bp distal
Rr585194	regulatory region 585194	1227 bp proximal
Rr585195	regulatory region 585195	1314 bp proximal
Rr585196	regulatory region 585196	1842 bp proximal