rs50808456 SNP Detail

Summary

• ID
  rs50808456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46449173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACAGCA ATATTTAACA
  CCAGGCCCTG TGACAACAGC CCCTTCAGGC CCTTGGACTG AGAGTCCTGT AGACGTTGGT
  AGGGCGATGA GACACACCCT GTGCTGCCTG TGTTATTTAT GCCTCTGGCA GTGAAGCCCC
  TGACAAAGCA GCATGTCACT GGGACACATG CTCTTTGTTC AGAGGTGCAT GCCAGCACCG
  R
  CTGTGCAGGA AGGCACAGTG CCCTGTCTGT AGTCGCTCTT CCTCTGACTC TCTGGCCTTC
  TTTTTTGTTG TTGTTGCATG CTGTGGCTGT GCTTATTAAC TACTCTGTAG CTTAATCTTA
  TTAAACATAC ATTCATCCTG TAGACTGTTT ACCATGGGAA AGATAACAGT CTCAACATAC
  TAGCTAGGAT CAATCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361391757	MGP_WTSI_4_46462045	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50808456					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391757	MGP_WTSI_4_46462045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46449173 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	1753 bp upstream
Cpgi14257	CpG island 14257	1281 bp proximal
Gm69233	predicted gene, 69233	1230 bp downstream
Rr100990	regulatory region 100990	827 bp proximal
Tssr37119	transcription start site region 37119	1698 bp upstream
Tssr37120	transcription start site region 37120	1719 bp upstream
Tssr37121	transcription start site region 37121	1739 bp upstream
Tssr37122	transcription start site region 37122	1871 bp upstream
Tssr37123	transcription start site region 37123	1907 bp upstream
Tssr37124	transcription start site region 37124	1945 bp upstream
Tssr37125	transcription start site region 37125	1973 bp upstream