rs50808639 SNP Detail

Summary

• ID
  rs50808639
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117808266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTAGGC CAAGTTAACA AACAACTTCA AGATTGCAAA
  TCTTAAGCGA AGGGCAAATC CATTATGCAT TATGGGTCTA ATTTAAGTTT TGAAACTTCA
  T
  TAACACTTGA GAATAAGTCT TCCAAAGGGT CATTGCGTGC CAGGATTGTG ATTTCTGTTA
  GTTTACAGTC TCAAGGTTTT TCTCTACTTA AAATTATCA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss138894155	ENSMUSSNP2253177	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324203266	CHEV_12_119083004	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50808639					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117808266 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	within coordinates
Cpgi5229	CpG island 5229	254 bp distal
Rr265167	regulatory region 265167	within coordinates
Tssr3984	transcription start site region 3984	1057 bp downstream
Tssr115551	transcription start site region 115551	1024 bp downstream
Tssr115552	transcription start site region 115552	791 bp downstream
Tssr115553	transcription start site region 115553	660 bp downstream
Tssr115554	transcription start site region 115554	608 bp downstream