rs50808887 SNP Detail

Summary

• ID
  rs50808887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTTCAT ATCAATTCTC
  ATGAGCAAGA CAGATGTGCA AGACAGATGT GAAAAGGAGA ATCCCTTTCT TCTTGTTGCA
  TTTGTTAGAG AATTGATCTG TACAGTCTAA AAAGAGGTCT TTCAGGTTAT GGCAAGACCA
  TCAGACAATG CTGTGGACTT TTAGCAATGG GAACAAGTCA TTTTACTTAT GTCCCAGTAA
  Y
  ACATACATGT GCAGTCCTTC TGATGCCTGA TAGATATTTT CTTATGTTGG ATTTTGGTTG
  TTATTACATT CACTCTTGTT CTTCTTCATG CATGTAAGCC ATGTCCCTTG TATTTCCTTG
  CACTTAGTCC AGAGGACTTA TTTCTGGCAT CTCACAAATC CAAGGCATAC TGTAGAAACA
  GGGTATATCA TTCCAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936900	NES16189356	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50808887					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936900	NES16189356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260375 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	636 bp downstream
Tssr58809	transcription start site region 58809	within coordinates
Tssr58810	transcription start site region 58810	2 bp upstream
Tssr58811	transcription start site region 58811	38 bp upstream
Tssr63019	transcription start site region 63019	1844 bp upstream
Tssr63020	transcription start site region 63020	912 bp upstream
Tssr63021	transcription start site region 63021	834 bp upstream
Tssr63022	transcription start site region 63022	795 bp upstream
Tssr63023	transcription start site region 63023	740 bp upstream
Tssr63024	transcription start site region 63024	642 bp upstream
Tssr63025	transcription start site region 63025	610 bp upstream
Tssr63026	transcription start site region 63026	589 bp upstream
Tssr63027	transcription start site region 63027	551 bp upstream
Tssr63028	transcription start site region 63028	526 bp upstream
Tssr63029	transcription start site region 63029	498 bp upstream
Tssr63030	transcription start site region 63030	442 bp upstream
Tssr63031	transcription start site region 63031	412 bp upstream
Tssr63032	transcription start site region 63032	381 bp upstream
Tssr63033	transcription start site region 63033	367 bp upstream
Tssr63034	transcription start site region 63034	341 bp upstream
Tssr63035	transcription start site region 63035	326 bp upstream
Tssr63036	transcription start site region 63036	259 bp upstream
Tssr63037	transcription start site region 63037	226 bp upstream
Tssr63038	transcription start site region 63038	201 bp upstream
Tssr63039	transcription start site region 63039	133 bp upstream
Tssr63040	transcription start site region 63040	89 bp upstream
Tssr63041	transcription start site region 63041	42 bp upstream
Tssr63042	transcription start site region 63042	22 bp upstream
Tssr63043	transcription start site region 63043	5 bp upstream
Tssr63044	transcription start site region 63044	6 bp downstream
Tssr63045	transcription start site region 63045	97 bp downstream
Tssr63046	transcription start site region 63046	116 bp downstream
Tssr63047	transcription start site region 63047	139 bp downstream
Tssr63048	transcription start site region 63048	167 bp downstream
Tssr63049	transcription start site region 63049	182 bp downstream
Tssr63050	transcription start site region 63050	206 bp downstream
Tssr63051	transcription start site region 63051	258 bp downstream
Tssr63052	transcription start site region 63052	1771 bp downstream
Tssr63053	transcription start site region 63053	1881 bp downstream