rs50809820 SNP Detail

Summary

• ID
  rs50809820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55521191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGTGT CCTCAGGTAC
  CAGAAGTCCC CTTGGAGCCA CTTCCTAAGA ATGAAGCGTG ACAAACTAAA GCCAGAGACC
  ACTATGGGTT AGGACTGTCA CCGGCCACCA CACCCTTCCT CATCCTTTCT TCCCCTTTTC
  CTTCATTCAC TCAGCAGGGC TCCTCGAGCA GAGGTGAGAA TCAGGGTCAC CACTGAACCT
  Y
  ACTTCTCCTT GTCTTGTAGC CTGTGTAAGT CATAGCTGTG GCTCTAGACC CCACTTTGCC
  CTCTTTAGCC TCCCAGCAGC CCCCAGAGGC TGGGAATCGG AGCCTAGCAC TCCCCTGGGG
  GAAATGGGCT CAAGTAAAAC CAGCTATTTC AGATTCCCAA ATGACTGAGC AGGAATTGGG
  CTCCTTTTAC CCCAGCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806355	NES17743780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50809820					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806355	NES17743780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55521191 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369714	regulatory region 369714	908 bp upstream
Rr480447	regulatory region 480447	1771 bp distal
Rr480448	regulatory region 480448	919 bp proximal