rs50811275 SNP Detail

Summary

• ID
  rs50811275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148713075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAAAAGG ATGATTGCAT
  TTTTTTTTTT TGATTTTTTT TTTTTTTTTT TTTTTTTTTT TTGGTTTTTC GAGAAAAGGT
  TTCTCTGTGT AGCCCTGGCT GTCGTGGAAC TCACTTTGTA GACCAGGCTG GCTTCAAACT
  CAGAAATCCG CCTGTCTCTG CCTCCCGAGT GCTGGGATTA AAGGCGTGCG CCACCACGCC
  Y
  AGCTTGCATT TTTTATTTAT TTTCTGTGTT CACGTCTCTG TGGGAAACCA AACCTGCTCT
  GTGTGAGTTT TTCTGTGAGC CATCTAGCTG GCACCAGCTA TCTTTTTTTT TTTTTTTAGA
  CAGGGTCCTA CTGTATATTC CAGGTTGACC TTCAAATCAG TCTTTCCCCC AGGCAGGTCT
  CCAGACTTCG GGAACTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148013374	ENSMUSSNP3906344	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50811275					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148713075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	1406 bp distal
Rr100546	regulatory region 100546	1074 bp distal
Rr398860	regulatory region 398860	1368 bp downstream
Tardbp	TAR DNA binding protein	1599 bp upstream
Tssr44612	transcription start site region 44612	1872 bp upstream
Tssr44613	transcription start site region 44613	1843 bp upstream
Tssr44614	transcription start site region 44614	1585 bp upstream