rs50811467 SNP Detail

Summary

• ID
  rs50811467
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27254899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTATATG TAAGTACACT
  GTAGCTGTCT TCAGACGCTC CAGAAGGAGT CAGCTCTTGT TACGGATGGT TGTGAGCCAC
  CATGTGGTTG CTGGGACTTG AACTCAGGAC CTTGGGAAGA ACAGTTGGTG CTCTTAACCA
  CTGAGCCACC TCACCAGCCC GAGAGCTGTC TTTTTAAAAA TGTTAATTTT GTCAATTTCC
  W
  CTATTCCGAG AGTCAGTGCA AGAGATGGAC TTTTAAAAAC ACTCCTCTGT GTTTGTGTGT
  ATGTCCGTGT GGCTGAGCAT GTGGTACCCG CCTGCAGATG CTAAAGTTGG ATGTCTTACT
  CAATTATTCT TTACCTTATA TTTTAAATCA GGGTCTCTCA CTGAACACGG AGCTTACCCA
  TTTGGGCACA CAGGATGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60985702	NES16135607	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50811467					SNP	T	T	T	T	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985702	NES16135607	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27254899 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	within coordinates
Cpgi18668	CpG island 18668	1822 bp distal
Gm45975	predicted gene, 45975	1070 bp upstream
Gm74065	predicted gene, 74065	within coordinates
Rr167329	regulatory region 167329	898 bp distal
Tssr65297	transcription start site region 65297	1207 bp upstream