rs50811972 SNP Detail

Summary

• ID
  rs50811972
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87615045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTGTAG AGTTTAAGCA
  AACAACTCAA GGCCCTGTGT GAAGCTCCCG CGTGAAGCTA CGTATCTTCA GTTGCCCATT
  GAGCTAGAGC GCCCAGCCCC AGCCCTGGGC CCTCATAGAT GGTCCAATGG AGCGGTTCTC
  CGAGCAAGGC CGGCTTGCAG CCTAAGGGAT TCATAAATTC TGTGACGGAG GTGGGGGGGG
  K
  GGTGGAGTCA CTAAAAGGTT TCTGGCATAC TCGACCAGCC CGCAGGAGGA GGCTGGGCGG
  CTGATTCCAA GAAACCGCAG GGATTTCCAG ACCGGAAGCC TACTTTGTAG TTATGATCTT
  GTCCCTTTAA ATGCCGCACA GTTCAAACTG GTTTGGGATG TTGAAACAGG CCTTCTAGGC
  TACCCTGAGG AGCACAGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136773429	ENSMUSSNP3133986	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50811972					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87615045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	1528 bp distal
D030062O11Rik	RIKEN cDNA D030062O11 gene	902 bp downstream
Gm69731	predicted gene, 69731	within coordinates
Rr684220	regulatory region 684220	1242 bp distal
Rr684221	regulatory region 684221	1558 bp distal
Rr684222	regulatory region 684222	within coordinates
Rr684223	regulatory region 684223	376 bp proximal
Rr684224	regulatory region 684224	1459 bp proximal
Tbx18	T-box18	1732 bp upstream
Tssr2959	transcription start site region 2959	1748 bp upstream
Tssr2960	transcription start site region 2960	1929 bp downstream
Tssr90806	transcription start site region 90806	1835 bp upstream
Tssr90807	transcription start site region 90807	1820 bp upstream
Tssr90808	transcription start site region 90808	1719 bp upstream
Tssr90809	transcription start site region 90809	1707 bp upstream