rs50812490 SNP Detail

Summary

• ID
  rs50812490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126934351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCTAGTG CAGTGCTTAT
  TTAAATGAAT ATATTTCCTC AAATGCTGTA CCAAATAGAA CCAAAATTAT CAACTCTGCT
  TCTCTTCTTC TGTATTAGGG TTGGGTTTTT TGTTTTGTTT TATGTTTTGT TTTCTGCAAT
  AAAGCACCCT AAAGAAAGCA GCTTATGGGG AAAGGTTTGT GTGTTCACTT CCTCCCACTG
  Y
  GGCCCCATGT CCTGGGCTTT GGCTGTGGTA CTGGTCTTGG GGTCCAGCTG TAGTCCCGCA
  TCCTCCATTT CCTCTCAGCG AGTCCAGGTG CTGTTGCACA CCAGGCTGGA GGGATGAAGT
  CTGGAATGTG TAGGGTCTGC AGAACCACCT GATAGTGCCG GCCAGGAGAA GGCCTTCTCA
  GAGGGTCTTA GTGTTGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145879578	ENSMUSSNP2262853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50812490					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126934351 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	41 bp downstream
Tssr69201	transcription start site region 69201	1598 bp downstream
Tssr69202	transcription start site region 69202	1554 bp downstream
Tssr69203	transcription start site region 69203	1512 bp downstream
Tssr69204	transcription start site region 69204	1344 bp downstream
Tssr69205	transcription start site region 69205	431 bp downstream
Tssr74988	transcription start site region 74988	40 bp upstream