rs50813070 SNP Detail

Summary

• ID
  rs50813070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53873124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAGAGC CTGGCCAGTC
  TCTGCTTCTG CAGTTCTGGG GTCAAAGGTG AAGACCACCG CTCCTGGCCT GTTTTTTAAT
  TAATTTAATT AATTTTTGAG GCAAGAGTCT TACTCTATTG AGCTTCCACA CTAGGCTAAG
  GTCAAGCCTA GGTAAGGACT TCAGTTAGAT GTAGCCTAGT AAGGCTGCAG TTTCACAGCA
  R
  GTGTCACTCC TTTGAGAAGA GACTTCTTTC TCTCTTGGCA TTGCATTACT CTGCGTTAAA
  AGGACACAGA ATCTGGCGAA ACACATCTTG AGACATAAAA TGCAACTTTA AGCATGACTG
  GTAAGAGTAT TTGCAAGGGA AAGCCCATCC CATATGGCTG GAGTTCAGCA GGAGCTACCA
  AGCTTGCTAG ACAACCAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62790767	NES17344580	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50813070					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62790767	NES17344580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53873124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	646 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	765 bp upstream
Rr339992	regulatory region 339992	within coordinates
Tssr5169	transcription start site region 5169	194 bp downstream
Tssr145221	transcription start site region 145221	640 bp upstream
Tssr145222	transcription start site region 145222	880 bp upstream
Tssr145223	transcription start site region 145223	1163 bp upstream
Tssr145224	transcription start site region 145224	1192 bp upstream
Tssr145225	transcription start site region 145225	1218 bp upstream