rs50814348 SNP Detail

Summary

• ID
  rs50814348
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80142721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GGGTAGGATG ATACAGCAGC
  S
  TCCCACTTCT GCAGCAGGCC TTTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148216356	ENSMUSSNP2983892	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325030597	CHEV_15_80088950	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50814348					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80142721 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	979 bp downstream
Rr505934	regulatory region 505934	656 bp distal
Tssr132205	transcription start site region 132205	1600 bp downstream
Tssr132206	transcription start site region 132206	1385 bp downstream
Tssr132207	transcription start site region 132207	1334 bp downstream
Tssr135434	transcription start site region 135434	979 bp upstream