rs50815265 SNP Detail

Summary

• ID
  rs50815265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33024214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCG TGTCTTTAAA AAGTCCAGGG
  Y
  TTGGCTGGGC TGATGGTACA CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss62681135	NES17310216	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		C	T	T		T
ss145476526	ENSMUSSNP4737870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325363782	CHEV_17_32942185	CHEVERUD	SCREENING_POP	f	SNP					T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50815265					SNP	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62681135	NES17310216	PERLEGEN	MM_PANEL	f	SNP	C/T
ss159833696	UOL_MMUSEQ_2257	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33024214 () rs orientation: forward

Symbol	Name	Function Class
A930009K04Rik	RIKEN cDNA A930009K04 gene	783 bp downstream
Gm55909	predicted gene, 55909	263 bp upstream
Tssr147401	transcription start site region 147401	458 bp downstream
Zfp811	zinc finger protein 811	within coordinates