rs50815332 SNP Detail

Summary

• ID
  rs50815332
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCGTCT TTACCAACGC
  CAGTGTCGCC GGGTCGGAAG GTATTGTCAG CCCCTCGCTG GCCCGCCTGC AGTCGCCTTT
  AGGAGCTAAG GCGTTGAGTC TCACCAGGGC CAGCACAGTG CCACCTTCCA CTGGGCTCGC
  CCCAGTTAGG ACTGCGAACC ACCCTGCCAG CCCTTGCACT TTGCGCAGAG GAAATTAAAG
  W
  CTCCTCCAAA GAAAACCTAA GTAATTCAAA ATCACCGCAA TAGGACTGCT ATTGAGACGA
  ACCCAGCTGG TTTTGCAGTA CAGCTCGAGG GCATGCGTGT CTAAATAGAA ATTCCTTGTA
  AACTTGCTTA TTCTTTACAC TTTTAAGCAA TGGGAAATCT GGAGAGCTCT AGTAACTGGC
  ACCTGGCATC ATATCTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63335199	NES17512772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50815332					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335199	NES17512772	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	21 bp distal
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	230 bp downstream
Rr444978	regulatory region 444978	406 bp distal
Rr444979	regulatory region 444979	322 bp distal
Rr444980	regulatory region 444980	within coordinates
Rr444981	regulatory region 444981	1782 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	395 bp upstream
Tssr100930	transcription start site region 100930	264 bp downstream
Tssr100931	transcription start site region 100931	245 bp downstream
Tssr107398	transcription start site region 107398	440 bp upstream
Tssr107399	transcription start site region 107399	410 bp upstream
Tssr107400	transcription start site region 107400	373 bp upstream