rs50816252 SNP Detail

Summary

• ID
  rs50816252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165506761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAACAAG GTGGGGAGAG CGGTCAGACT CTCCCGGAAG
  GGGACAGAAC GGAGACAGGC CAAGGCGGTG ATGGTCAGGG CTGTGGAGCA AACACCCGAC
  R
  CCAATCTTAC TTTTACGTGA CTGTAGACAG ATGACTTCAC CTCTGGGATG TTCAGGATCT
  TGTCTATAAA GGAGAGACAG TAGCTCTTCC CACCATGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146004961	ENSMUSSNP6897054	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50816252					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165506761 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Tssr14776	transcription start site region 14776	349 bp upstream
Tssr14777	transcription start site region 14777	252 bp upstream