rs50816403 SNP Detail

Summary

• ID
  rs50816403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCAGCC CGGCGCTGGT
  CTCCGCAGTC GGCGGTGACG TCATCACCGC GCGCCTAGTA GAAGGCAGCG CCCTAAGGAA
  GTGGAAGGGG ATGTTGAGTC GACTGCAGGA GCTCCGCAAG GAGGAGGAAA CCCTGCTGCG
  TCTAAAGGCG GCTCTACACG ACCAACTGAA CCGCCTCAAG GTGAGCGTAC AGCTTTCCAG
  S
  TCTAGCCCCT CGGGACGTCG ACGGAGCGCG GCGGTACAGC TCCAGGCCGC TAGGTGTTGA
  GCAGGTTTAG CTCCTGAGCC CGCATCTACC CCGACCCAGC ACGCCGGCTC ACGGGTTACT
  GCTGTTTATA TGCACTAGAG GGGGCTTTAG TGTTGTCATG CTAGTACTGA ATCTCAGACC
  CGCTTGAGGC GCGAATGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410337	NES16794836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50816403					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410337	NES16794836	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	within coordinates
Rpl4	ribosomal protein L4	775 bp downstream
Rr368801	regulatory region 368801	79 bp downstream
Rr681196	regulatory region 681196	157 bp distal
Rr681197	regulatory region 681197	70 bp distal
Rr681198	regulatory region 681198	43 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	within coordinates
Tssr85602	transcription start site region 85602	1989 bp downstream
Tssr85603	transcription start site region 85603	1703 bp downstream
Tssr85604	transcription start site region 85604	1661 bp downstream
Tssr85605	transcription start site region 85605	1085 bp downstream
Tssr85606	transcription start site region 85606	1025 bp downstream
Tssr85607	transcription start site region 85607	159 bp downstream
Tssr85608	transcription start site region 85608	92 bp downstream
Tssr90132	transcription start site region 90132	1630 bp upstream
Tssr90133	transcription start site region 90133	1062 bp upstream
Tssr90134	transcription start site region 90134	992 bp upstream