rs50816619 SNP Detail

Summary

• ID
  rs50816619
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGGACT ACAGGATAGC
  AGGATGGACG ACCACCAGAT TGAGGGATAG TATAATACCC AAAAGTGGCT TCAGATTTGT
  TCTTAAGTCA TATATAAGGG ACCATGATCT GGGAACACAG ATCCAGGCTG CCCCAAATAG
  CATGTTCTCG CATGGAAACT TGCTTCACTA CGTTTTTGTA ATTGCAGAAG AAAAGGAAGC
  M
  ATAAATCAAG GCATTTTTCC AATGCATTGA TGAAAACATC ACCAAAGACT GTTAGTATTG
  GGTTTGAGAT GGAAGCTGAG AAAACTCACT TTAGAGATGG AAATTTAAAA ATTAAGGCTT
  TATTTTCTGA GTGCTCAGGG AGGCAGCCAG TTTGGGATCT GAACCACGTA CGGGGTGGGA
  GATTATACAG CATTGTTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134758232	ENSMUSSNP4482571	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50816619					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898885 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	426 bp upstream
Rr575077	regulatory region 575077	56 bp distal
Tssr32964	transcription start site region 32964	488 bp upstream
Tssr32965	transcription start site region 32965	423 bp upstream