rs50817583 SNP Detail

Summary

• ID
  rs50817583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCACT ACAGTGTCAG
  TTTCAGAGGG TCCCACTATG TAGCCTGGGC TGTCATGGAA CTTGCTATGT AGTCCAGGCT
  AGCCTCAAAC TTGCTGCCAT CTTCCTTCTG TTTCCCAGGT GCAAAGATTA CAGGAATACA
  TCACCACACC CATCAATAGC AAAGATATTT GTCTGTCTTG TTCATGGCTG TCTGGCACAC
  R
  CATGAATCCA CGCTGAATAC ACAGTTGAAG GGGTGATGTG GGCATGTCTA TGTCATCAGT
  GGGGGTTCAA TAAGCAGGAA GGGGGGATAT CAGAGGGGAA GAATCAGGAT GACCAAATGG
  AGCCCCTGCT GGTCTACAAC TGCTCTTAAG TTGTATAAGT GAATCTATAG TGACCAGAAG
  ATCTGCCCCA CTGAGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696846	ENSMUSSNP6270917	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322138588	CHEV_7_31821046	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50817583					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735452 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	816 bp upstream
Gm71772	predicted gene, 71772	962 bp upstream
Rr644978	regulatory region 644978	1669 bp distal
Rr644979	regulatory region 644979	948 bp distal
Rr644980	regulatory region 644980	1003 bp distal
Rr644981	regulatory region 644981	872 bp proximal
Rr644982	regulatory region 644982	973 bp proximal
Tssr2191	transcription start site region 2191	542 bp upstream
Tssr65830	transcription start site region 65830	759 bp downstream
Tssr65831	transcription start site region 65831	961 bp upstream
Tssr65832	transcription start site region 65832	1381 bp upstream
Tssr65833	transcription start site region 65833	1778 bp upstream
Tssr65834	transcription start site region 65834	1832 bp upstream
Tssr71891	transcription start site region 71891	430 bp downstream
Tssr71892	transcription start site region 71892	991 bp downstream
Tssr71893	transcription start site region 71893	1833 bp downstream
Tssr71894	transcription start site region 71894	1854 bp downstream
Tssr71895	transcription start site region 71895	1867 bp downstream
Tssr71896	transcription start site region 71896	1897 bp downstream