rs50817752 SNP Detail

Summary

• ID
  rs50817752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141148773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG CACAGGGCAG GACCCACCCC
  Y
  TGCCCTGGCA GGTACAGAGG TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147735968	ENSMUSSNP715213	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50817752					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141148773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	1784 bp distal
Cpgi15227	CpG island 15227	172 bp proximal
Gm70184	predicted gene, 70184	403 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1225 bp downstream
Tssr40053	transcription start site region 40053	664 bp downstream
Tssr40054	transcription start site region 40054	197 bp upstream
Tssr40055	transcription start site region 40055	225 bp upstream
Tssr40056	transcription start site region 40056	232 bp upstream
Tssr40057	transcription start site region 40057	288 bp upstream
Tssr40058	transcription start site region 40058	323 bp upstream
Tssr40059	transcription start site region 40059	346 bp upstream
Tssr40060	transcription start site region 40060	379 bp upstream
Tssr40061	transcription start site region 40061	422 bp upstream
Tssr40062	transcription start site region 40062	1046 bp upstream
Tssr44314	transcription start site region 44314	1161 bp downstream