rs50818055 SNP Detail

Summary

• ID
  rs50818055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCTCTC TGTGCTGTGA
  AGAGCCAGTA TAAGCATGTT CCCAGGCCCA ACCCATGCTT TTCCTACTGG AATGCCAGAT
  TCTACCAGAT CAGTTCACAG ATAGCTCAAC AGAAGAGGAA ATAAGAGAAC TCACTTAAAC
  GTCTGTTTCT TGAGGCCACA ACTGCAATGC AAACACAAGT CTTTGCTTAA GAGTTTTCAG
  Y
  CCCCAAGCCC CTTCAACAGG GTGTGTTGGC ACTTGCCGAG GAAGTGTAAT GTTGCTTCCT
  GTTTGATGCT AACCACAGCC AGCCTGAGAG TTCCCAGAAA CTGCTCTGCT GGTTTTGAAT
  GGCAGGATGC TATCACAACG GAGAAAGTGG TGATGGGCAG GATTGTCTGA ACGCTATTTA
  AAAGTGTGAC CCAGTCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148811317	ENSMUSSNP5087512	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324295913	CHEV_13_24467850	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50818055					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559964 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	31 bp upstream
Tssr4016	transcription start site region 4016	69 bp upstream
Tssr118892	transcription start site region 118892	53 bp upstream
Tssr118893	transcription start site region 118893	89 bp upstream
Tssr118894	transcription start site region 118894	153 bp upstream
Tssr118895	transcription start site region 118895	187 bp upstream
Tssr121784	transcription start site region 121784	22 bp upstream
Tssr121785	transcription start site region 121785	9 bp upstream
Tssr121786	transcription start site region 121786	41 bp downstream