rs50819166 SNP Detail

Summary

• ID
  rs50819166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACATTA AATAAATAAA
  TAAATAAATA AATCTTTAAA AAGAAATAGC ACCTAGAGAC TTTACTTTGA ACTGAGATGG
  CACCAGGGTC TGGGACATGG CAGGCAACCC TGTACCACTG ACCTGCTGCC TTAGCCGCCT
  GTGGACTTTG CTTTGCCCAA ATACAGCTGT GGAGCCCAGA ATGGCCCAGA ACTCTCCATC
  Y
  TCTTACCTTC TCAAAGGCTC ACATTACAAG TAAATGCCAC CATGACCAAC ACAGGGAACT
  CGGGGGAGGC TGGACAGACA GACGTCTTGG TGTAGCAAGT GGTCGAGGAA ACTTTGCAGA
  GAGGGGCTTT TCTACTCGGC ATACGCCAGG CATCGACAGT TCCCATCAGT CTGCCTCCAT
  AGGTTAGCTG ATTTCTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471736	ENSMUSSNP1200694	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50819166					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997262 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	1538 bp proximal
Tssr70882	transcription start site region 70882	1278 bp upstream
Tssr70883	transcription start site region 70883	1132 bp downstream
Tssr70884	transcription start site region 70884	1473 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates