rs50819971 SNP Detail

Summary

• ID
  rs50819971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120125232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA AGTCAAATCC TTTAGCTTGT
  R
  ACTGTAGTGG CCCTTGCCAG TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss60789089	NES16467262	PERLEGEN	MM_PANEL2	f	SNP		A	A		G			A
ss145313890	ENSMUSSNP2256815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss319932150	CHEV_1_122094079	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs50819971					SNP	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60789089	NES16467262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120125232 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	within coordinates
Rr417161	regulatory region 417161	within coordinates
Rr417162	regulatory region 417162	132 bp distal