rs50822778 SNP Detail

Summary

• ID
  rs50822778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68293562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT GAGCTGCGGT AGGATACTTG
  Y
  TTAGTGTATT CGAAACCCTG GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147365535	ENSMUSSNP7127376	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325667209	CHEV_18_68320145	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50822778					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68293562 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr540016	regulatory region 540016	within coordinates
Tssr151775	transcription start site region 151775	297 bp downstream