rs50823391 SNP Detail

Summary

• ID
  rs50823391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57530732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGGACT GGACTGAATA
  AAAAGGAGGA AGTGAACTAA ACACTCAGTG CTCATTCATC TTTGCTGGTA GGGTGTGAAA
  AAGATGCCGT ATGCTCCTGC TGCTGTGCCT GCCAGCCACG CAGGACAGTC ACCTCCCACT
  GTGAGCTGTG GTATACATTC CTTCCTTAAG TGGCTTTTGC CAGGTGTTTT ATTACAGCAA
  Y
  GTGGGATCCT CTGGGTGGAC CACGGAGGTG TCATGAAAAC AGCAGAGCTC TGTGCTTCCC
  TGACCGTGGA GACCAGGGTT GGAGCTCTAG GCACTCACTG TGATGGTCAG GGGTTGGCGG
  CTGTTGGGTG TGTTGATGCT TAGCTTGGCC ACGCCATCAT CTTGGGTGAG AGCCTTTGCA
  TTAGATCCCT GAGTGACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62812202	NES17355695	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50823391					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812202	NES17355695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57530732 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	590 bp proximal
Tssr145377	transcription start site region 145377	1501 bp downstream
Tssr145378	transcription start site region 145378	597 bp downstream
Tssr145379	transcription start site region 145379	522 bp downstream
Tssr145380	transcription start site region 145380	477 bp downstream
Tssr145381	transcription start site region 145381	423 bp downstream
Tssr145382	transcription start site region 145382	86 bp upstream
Tssr145383	transcription start site region 145383	202 bp upstream
Tssr145384	transcription start site region 145384	335 bp upstream
Tssr145385	transcription start site region 145385	1517 bp upstream
Tssr148939	transcription start site region 148939	1803 bp upstream
Tssr148940	transcription start site region 148940	1459 bp upstream
Tssr148941	transcription start site region 148941	1386 bp upstream
Tssr148942	transcription start site region 148942	886 bp upstream
Tssr148943	transcription start site region 148943	846 bp upstream
Tssr148944	transcription start site region 148944	832 bp upstream
Tssr148945	transcription start site region 148945	795 bp upstream
Tssr148946	transcription start site region 148946	783 bp upstream
Tssr148947	transcription start site region 148947	533 bp upstream
Tssr148948	transcription start site region 148948	449 bp upstream
Tssr148949	transcription start site region 148949	393 bp upstream
Tssr148950	transcription start site region 148950	123 bp downstream
Tssr148951	transcription start site region 148951	164 bp downstream
Tssr148952	transcription start site region 148952	205 bp downstream
Tssr148953	transcription start site region 148953	389 bp downstream
Tssr148954	transcription start site region 148954	440 bp downstream
Tssr148955	transcription start site region 148955	587 bp downstream
Tssr148956	transcription start site region 148956	620 bp downstream
Tssr148957	transcription start site region 148957	1148 bp downstream
Tssr148958	transcription start site region 148958	1371 bp downstream
Tssr148959	transcription start site region 148959	1531 bp downstream