rs50825685 SNP Detail

Summary

• ID
  rs50825685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122296929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC AGTGCGATGA GAGTCCGTCT
  Y
  CTGCATTTTC CTACCCCCTC CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149186877	ENSMUSSNP1728733	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321668910	CHEV_5_122608875	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50825685					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122296929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	within coordinates
Gm73495	predicted gene, 73495	800 bp upstream
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	within coordinates
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	526 bp downstream