rs50826394 SNP Detail

Summary

• ID
  rs50826394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180469698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGACTGTG GGGTGGGCAT TACACACGGA TGTGAGCACC
  GCAGCCCATA TAAGTATGTT ATTCTGCCTG ACACCCACCC CTGTTCACTG CCTCACTTCT
  S
  CTTCTATACT CACAACCTCT GAGACGGATG TTCACCTGTC CGCAGACAGT AAAGCCAGCT
  ACTCTGCGAC CTAAGGACAA GGGAACAATT TTGTAATTTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60350689	NES15848753	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	G	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs50826394					SNP	G	G	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60350689	NES15848753	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180469698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	33 bp distal
Lin9	lin-9 DREAM MuvB core complex component	within coordinates
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	1427 bp downstream
Tssr10482	transcription start site region 10482	759 bp downstream